init: 初始化 dpb 桃育种系统代码库
前后端 + 后端 FastAPI 全量源码、部署脚本与文档。
This commit is contained in:
34047007@qq.com
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import urllib.parse
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from typing import Annotated
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from fastapi import APIRouter, Body, Depends, File, Path, Query, UploadFile
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from fastapi.responses import JSONResponse, StreamingResponse
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from sqlalchemy.ext.asyncio import AsyncSession
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from app.common.response import ResponseSchema, StreamResponse, SuccessResponse
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from app.core.base_schema import AuthSchema, PageResultSchema, PaginationQueryParam, ImportResultSchema
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from app.core.dependencies import AuthPermission, db_getter
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from app.core.router_class import OperationLogRoute
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from app.utils.common_util import bytes2file_response
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from .schema import (
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PedigreeCreateSchema,
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PedigreeOutSchema,
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PedigreeQueryParam,
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PedigreeUpdateSchema,
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)
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from .service import PedigreeService
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PedigreeRouter = APIRouter(route_class=OperationLogRoute, prefix="/pedigree", tags=["系谱管理"])
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@PedigreeRouter.get("/detail/{id}", summary="获取系谱管理详情", response_model=ResponseSchema[PedigreeOutSchema])
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async def get_pedigree__detail_controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:detail"]))],
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id: Annotated[int, Path(description="系谱管理ID")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = PedigreeService(auth, db)
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result_dict = await service.detail(id=id)
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return SuccessResponse(data=result_dict, msg="获取系谱详情成功")
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@PedigreeRouter.get("/list", summary="分页查询系谱管理", response_model=ResponseSchema[PageResultSchema[PedigreeOutSchema]])
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async def get_pedigree__list_controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:query"]))],
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page: Annotated[PaginationQueryParam, Depends()],
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search: Annotated[PedigreeQueryParam, Query()],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = PedigreeService(auth, db)
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result_dict = await service.page(
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page_no=page.page_no,
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page_size=page.page_size,
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search=search,
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order_by=page.order_by,
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)
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return SuccessResponse(data=result_dict, msg="查询系谱列表成功")
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@PedigreeRouter.get("/options", summary="系谱管理下拉选项")
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async def get_pedigree__options_controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:query"]))],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = PedigreeService(auth, db)
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options = await service.list_options()
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return SuccessResponse(data=options, msg="获取系谱选项成功")
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@PedigreeRouter.post("/create", summary="创建系谱管理", response_model=ResponseSchema[PedigreeOutSchema])
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async def create_pedigree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:create"]))],
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data: Annotated[PedigreeCreateSchema, Body(description="创建参数")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = PedigreeService(auth, db)
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result_dict = await service.create(data=data)
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return SuccessResponse(data=result_dict, msg="创建系谱成功")
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@PedigreeRouter.put("/update/{id}", summary="修改系谱管理", response_model=ResponseSchema[PedigreeOutSchema])
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async def update_pedigree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:update"]))],
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id: Annotated[int, Path(description="系谱管理ID")],
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data: Annotated[PedigreeUpdateSchema, Body(description="修改参数")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = PedigreeService(auth, db)
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result_dict = await service.update(id=id, data=data)
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return SuccessResponse(data=result_dict, msg="修改系谱成功")
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@PedigreeRouter.delete("/delete", summary="删除系谱管理", response_model=ResponseSchema[None])
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async def delete_pedigree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:delete"]))],
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ids: Annotated[list[int], Body(description="ID列表")],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = PedigreeService(auth, db)
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await service.delete(ids=ids)
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return SuccessResponse(msg="删除系谱成功")
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@PedigreeRouter.post("/export", summary="导出系谱管理")
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async def export_pedigree__controller(
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:export"]))],
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search: Annotated[PedigreeQueryParam, Query()],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> StreamingResponse:
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service = PedigreeService(auth, db)
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result_dict_list = await service.get_list(search=search)
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export_result = PedigreeService.batch_export(obj_list=[item.model_dump() for item in result_dict_list])
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return StreamResponse(
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data=bytes2file_response(export_result),
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media_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
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headers={"Content-Disposition": f"attachment; filename={urllib.parse.quote('系谱管理.xlsx')}"},
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)
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@PedigreeRouter.post("/import", summary="导入系谱管理", response_model=ResponseSchema[ImportResultSchema])
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async def import_pedigree__controller(
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file: Annotated[UploadFile, File(description="导入文件")],
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auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:pedigree:import"]))],
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db: Annotated[AsyncSession, Depends(db_getter)],
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) -> JSONResponse:
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service = PedigreeService(auth, db)
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batch_import_result = await service.batch_import(file=file, update_support=True)
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return SuccessResponse(data=batch_import_result, msg="导入系谱成功")
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@PedigreeRouter.post("/download/template", summary="获取系谱管理导入模板", dependencies=[Depends(AuthPermission(["module_bre:pedigree:download"]))])
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async def download_pedigree__template_controller() -> StreamingResponse:
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import_template_result = PedigreeService.import_template_download()
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return StreamResponse(
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data=bytes2file_response(import_template_result),
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media_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
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headers={
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"Content-Disposition": f"attachment; filename={urllib.parse.quote('系谱管理导入模板.xlsx')}",
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"Access-Control-Expose-Headers": "Content-Disposition",
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},
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)
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@@ -0,0 +1,18 @@
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from typing import Any
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from sqlalchemy.ext.asyncio import AsyncSession
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from app.core.base_crud import CRUDBase
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from app.core.base_schema import AuthSchema
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from .model import PedigreeModel
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class BreedingPedigreeCRUD(CRUDBase[PedigreeModel, Any, Any]):
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"""系谱管理 CRUD —— 直接复用 CRUDBase（已自动注入数据权限过滤）。"""
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def __init__(self, auth: AuthSchema, db: AsyncSession) -> None:
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super().__init__(PedigreeModel, auth, db)
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pedigree_crud = BreedingPedigreeCRUD
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@@ -0,0 +1,40 @@
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"""系谱管理 数据模型"""
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from datetime import datetime
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from sqlalchemy import Float, ForeignKey, Index, Integer, String, Text
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from sqlalchemy.orm import Mapped, mapped_column
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from app.core.base_model import MappedBase, ModelMixin, UserMixin
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class PedigreeModel(ModelMixin, UserMixin, MappedBase):
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"""系谱管理 主数据表。"""
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__tablename__ = "bre_pedigree"
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combination_id: Mapped[int] = mapped_column(
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Integer, ForeignKey("bre_cross_combination.id", ondelete="CASCADE"),
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index=True, nullable=False, comment="来源杂交组合"
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)
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child_code: Mapped[str] = mapped_column(String(64), nullable=False, comment="子代种质编号")
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dam_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_germplasm.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="母本(种质)"
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)
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sire_id: Mapped[int | None] = mapped_column(
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Integer, ForeignKey("bre_germplasm.id", ondelete="SET NULL"),
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index=True, nullable=True, comment="父本(种质)"
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)
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generation: Mapped[str | None] = mapped_column(String(16), nullable=True, comment="世代", default=None)
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remark: Mapped[str | None] = mapped_column(Text, nullable=True, comment="备注", default=None)
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# 无 status 列：覆盖基类默认 ix_<表>_status_deleted 索引，
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# 仅保留 (created_time, is_deleted) 复合索引用于数据权限过滤。
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__table_args__ = (
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Index("ix_bre_pedigree_created_deleted", "created_time", "is_deleted"),
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)
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@@ -0,0 +1,53 @@
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from app.core.base_schema import CommonSchema
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"""系谱管理 —— Pydantic 校验/序列化模型。"""
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from datetime import datetime
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from pydantic import BaseModel, ConfigDict, Field
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class PedigreeBaseSchema(BaseModel):
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model_config = ConfigDict(from_attributes=True)
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combination_id: int = Field(..., description="来源杂交组合")
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child_code: str = Field(..., description="子代种质编号")
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dam_id: int | None = Field(default=None, description="母本种质(规格 §3.18)")
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sire_id: int | None = Field(default=None, description="父本种质(规格 §3.18)")
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generation: str | None = Field(default=None, description="世代")
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remark: str | None = Field(default=None, description="备注")
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class PedigreeCreateSchema(PedigreeBaseSchema):
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pass
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class PedigreeUpdateSchema(PedigreeBaseSchema):
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combination_id: int | None = Field(default=None, description="来源杂交组合")
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child_code: str | None = Field(default=None, description="子代种质编号")
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dam_id: int | None = Field(default=None, description="母本种质(规格 §3.18)")
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sire_id: int | None = Field(default=None, description="父本种质(规格 §3.18)")
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generation: str | None = Field(default=None, description="世代")
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remark: str | None = Field(default=None, description="备注")
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class PedigreeOutSchema(PedigreeBaseSchema):
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id: int
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uuid: str
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combination_name: str | None = None # 由 Service 层联表填充
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dam_name: str | None = None # 母本名称(联表填充)
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sire_name: str | None = None # 父本名称(联表填充)
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child_code: str | None = None
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generation: str | None = None
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remark: str | None = None
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created_time: datetime | None = None
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updated_time: datetime | None = None
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created_by: CommonSchema | None = None
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updated_by: CommonSchema | None = None
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class PedigreeQueryParam(BaseModel):
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combination_id: int | None = Field(default=None, description="来源杂交组合", json_schema_extra={"q": "eq"})
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child_code: str | None = Field(default=None, description="子代种质编号", json_schema_extra={"q": "like"})
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dam_id: int | None = Field(default=None, description="母本种质", json_schema_extra={"q": "eq"})
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sire_id: int | None = Field(default=None, description="父本种质", json_schema_extra={"q": "eq"})
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generation: str | None = Field(default=None, description="世代", json_schema_extra={"q": "eq"})
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@@ -0,0 +1,255 @@
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from typing import Any
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from fastapi import UploadFile
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from sqlalchemy.ext.asyncio import AsyncSession
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from app.core.base_schema import AuthSchema, PageResultSchema, ImportResultSchema
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from app.core.exceptions import CustomException
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from app.core.logger import logger
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from app.utils.common_util import search_to_dict
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from app.utils.excel_util import ExcelUtil
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from .crud import BreedingPedigreeCRUD
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from .schema import (
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PedigreeCreateSchema,
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PedigreeOutSchema,
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PedigreeQueryParam,
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PedigreeUpdateSchema,
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)
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from app.api.v1.module_bre.cross_combination.crud import BreedingCrossCombinationCRUD
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from app.api.v1.module_bre.germplasm.model import BreedingGermplasmModel
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from app.api.v1.module_bre.germplasm.crud import BreedingGermplasmCRUD
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from app.core.base_crud import assert_no_children, assert_parents_exist
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from app.api.v1.module_bre.cross_combination.model import CrossCombinationModel
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def _is_blank(v: Any) -> bool:
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return v is None or (isinstance(v, str) and v.strip() == "")
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def _none_if_blank(v: Any) -> Any:
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if _is_blank(v):
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return None
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return str(v).strip() if isinstance(v, str) else v
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def _to_float(v: Any) -> float | None:
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if _is_blank(v):
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return None
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try:
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return float(v)
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except (TypeError, ValueError):
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return None
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def _to_int(v: Any) -> int | None:
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if _is_blank(v):
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return None
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try:
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return int(float(v))
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except (TypeError, ValueError):
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return None
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class PedigreeService:
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"""系谱管理 模块服务层"""
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def __init__(self, auth: AuthSchema, db: AsyncSession) -> None:
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self.auth = auth
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self.db = db
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async def _attach_fk_labels(self, items: list[PedigreeOutSchema]) -> None:
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if not items:
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return
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crud = BreedingPedigreeCRUD(self.auth, self.db)
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combination_id_ids = {getattr(it, "combination_id") for it in items if getattr(it, "combination_id")}
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if combination_id_ids:
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refs = await BreedingCrossCombinationCRUD(self.auth, self.db).get_list(search={"id": ("in", list(combination_id_ids))})
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ref_map = {r.id: getattr(r, "combination_code") for r in refs}
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for it in items:
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it.combination_name = ref_map.get(getattr(it, "combination_id"))
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germ_ids = {
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g for it in items
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for g in (getattr(it, "dam_id"), getattr(it, "sire_id"))
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if g
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}
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if germ_ids:
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germ_map = {
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r.id: getattr(r, "cultivar_name")
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for r in await BreedingGermplasmCRUD(self.auth, self.db).get_list(search={"id": ("in", list(germ_ids))})
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}
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for it in items:
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it.dam_name = germ_map.get(getattr(it, "dam_id"))
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it.sire_name = germ_map.get(getattr(it, "sire_id"))
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async def detail(self, id: int) -> PedigreeOutSchema:
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obj = await BreedingPedigreeCRUD(self.auth, self.db).get(id=id)
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if not obj:
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raise CustomException(msg="该系谱不存在")
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out = PedigreeOutSchema.model_validate(obj)
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await self._attach_fk_labels([out])
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return out
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async def get_list(
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self,
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search: PedigreeQueryParam | None = None,
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order_by: list[dict[str, str]] | None = None,
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) -> list[PedigreeOutSchema]:
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obj_list = await BreedingPedigreeCRUD(self.auth, self.db).get_list(
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search=search_to_dict(search), order_by=order_by
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)
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outs = [PedigreeOutSchema.model_validate(obj) for obj in obj_list]
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await self._attach_fk_labels(outs)
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return outs
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async def page(
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self,
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page_no: int,
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page_size: int,
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search: PedigreeQueryParam | None = None,
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order_by: list[dict[str, str]] | None = None,
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) -> PageResultSchema[PedigreeOutSchema]:
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offset = (page_no - 1) * page_size
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result = await BreedingPedigreeCRUD(self.auth, self.db).page(
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offset=offset,
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limit=page_size,
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order_by=order_by or [{"id": "asc"}],
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search=search_to_dict(search, {}),
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out_schema=PedigreeOutSchema,
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)
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await self._attach_fk_labels(result.items)
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return result
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async def _check_parents(self, data: PedigreeCreateSchema | PedigreeUpdateSchema) -> None:
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checks: list[tuple[Any, Any, str]] = [
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(CrossCombinationModel, data.combination_id, '杂交组合'),
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]
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if getattr(data, "dam_id", None):
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checks.append((BreedingGermplasmModel, data.dam_id, '母本种质'))
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if getattr(data, "sire_id", None):
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checks.append((BreedingGermplasmModel, data.sire_id, '父本种质'))
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await assert_parents_exist(self.db, checks)
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async def create(self, data: PedigreeCreateSchema) -> PedigreeOutSchema:
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await self._check_parents(data)
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obj = await BreedingPedigreeCRUD(self.auth, self.db).create(data=data)
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out = PedigreeOutSchema.model_validate(obj)
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await self._attach_fk_labels([out])
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return out
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async def update(self, id: int, data: PedigreeUpdateSchema) -> PedigreeOutSchema:
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obj = await BreedingPedigreeCRUD(self.auth, self.db).get(id=id)
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if not obj:
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raise CustomException(msg="更新失败，该系谱不存在")
|
||||
await self._check_parents(data)
|
||||
obj = await BreedingPedigreeCRUD(self.auth, self.db).update(id=id, data=data)
|
||||
out = PedigreeOutSchema.model_validate(obj)
|
||||
await self._attach_fk_labels([out])
|
||||
return out
|
||||
|
||||
async def delete(self, ids: list[int]) -> None:
|
||||
if not ids:
|
||||
raise CustomException(msg="删除失败，删除对象不能为空")
|
||||
objs = await BreedingPedigreeCRUD(self.auth, self.db).get_list(search={"id": ("in", ids)})
|
||||
obj_map = {o.id: o for o in objs}
|
||||
for id_ in ids:
|
||||
if id_ not in obj_map:
|
||||
raise CustomException(msg="删除失败，该系谱不存在")
|
||||
await BreedingPedigreeCRUD(self.auth, self.db).delete(ids=ids)
|
||||
|
||||
async def list_options(self) -> list[dict[str, Any]]:
|
||||
"""供前端下拉选择使用：返回 [{value, label}]。"""
|
||||
obj_list = await BreedingPedigreeCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
|
||||
return [{"value": o.id, "label": o.child_code} for o in obj_list]
|
||||
|
||||
@staticmethod
|
||||
def batch_export(obj_list: list[dict[str, Any]]) -> bytes:
|
||||
mapping_dict = {
|
||||
"combination_name": "来源杂交组合",
|
||||
"child_code": "子代种质编号",
|
||||
"generation": "世代",
|
||||
"remark": "备注",
|
||||
"created_time": "创建时间",
|
||||
"created_by": "创建者",
|
||||
}
|
||||
data = [dict(item) for item in obj_list]
|
||||
for item in data:
|
||||
creator = item.get("created_by")
|
||||
item["created_by"] = creator.get("name", "未知") if isinstance(creator, dict) else "未知"
|
||||
return ExcelUtil.export_list2excel(list_data=data, mapping_dict=mapping_dict)
|
||||
|
||||
async def batch_import(self, file: UploadFile, update_support: bool = False) -> ImportResultSchema:
|
||||
header_dict = {
|
||||
"来源杂交组合": "combination_id",
|
||||
"子代种质编号": "child_code",
|
||||
"世代": "generation",
|
||||
"备注": "remark",
|
||||
}
|
||||
try:
|
||||
contents = await file.read()
|
||||
rows = ExcelUtil.read_excel_to_dicts(contents)
|
||||
await file.close()
|
||||
if not rows:
|
||||
raise CustomException(msg="导入文件为空")
|
||||
missing_headers = [h for h in header_dict if h not in rows[0]]
|
||||
if missing_headers:
|
||||
raise CustomException(msg=f"导入文件缺少必要的列: {', '.join(missing_headers)}")
|
||||
combination_id_refs = await BreedingCrossCombinationCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
|
||||
combination_id_map = {getattr(r, "combination_code"): r.id for r in combination_id_refs}
|
||||
mapped_rows = []
|
||||
for row in rows:
|
||||
mapped_rows.append({en: row.get(ch) for ch, en in header_dict.items()})
|
||||
required_fields = ["combination_id", "child_code"]
|
||||
errors = []
|
||||
for field in required_fields:
|
||||
missing_indices = [i + 1 for i, r in enumerate(mapped_rows) if _is_blank(r.get(field))]
|
||||
if missing_indices:
|
||||
field_name = next(k for k, v in header_dict.items() if v == field)
|
||||
rows_str = "、".join(str(i) for i in missing_indices)
|
||||
errors.append(f"{field_name}不能为空，第{rows_str}行")
|
||||
if errors:
|
||||
raise CustomException(msg=f"导入失败，以下行缺少必要字段：\n{'; '.join(errors)}")
|
||||
error_msgs: list[str] = []
|
||||
success_count = 0
|
||||
crud = BreedingPedigreeCRUD(self.auth, self.db)
|
||||
for i, row in enumerate(mapped_rows, start=1):
|
||||
try:
|
||||
combination_id_val = combination_id_map.get(str(row.get("combination_id")).strip()) if not _is_blank(row.get("combination_id")) else None
|
||||
fields = {
|
||||
"combination_id": combination_id_val,
|
||||
"child_code": _none_if_blank(row.get("child_code")),
|
||||
"generation": _none_if_blank(row.get("generation")),
|
||||
"remark": _none_if_blank(row.get("remark")),
|
||||
}
|
||||
create_data = PedigreeCreateSchema(**fields)
|
||||
await crud.create(data=create_data)
|
||||
success_count += 1
|
||||
except Exception as e:
|
||||
error_msgs.append(f"第{i}行: {e!s}")
|
||||
continue
|
||||
return ImportResultSchema(
|
||||
valid_count=success_count,
|
||||
invalid_count=len(error_msgs),
|
||||
message_list=error_msgs,
|
||||
)
|
||||
except Exception as e:
|
||||
logger.error(f"批量导入系谱管理失败: {e!s}")
|
||||
raise CustomException(msg=f"导入失败: {e!s}")
|
||||
|
||||
@staticmethod
|
||||
def import_template_download() -> bytes:
|
||||
header_list = [
|
||||
"来源杂交组合",
|
||||
"子代种质编号",
|
||||
"世代",
|
||||
"备注",
|
||||
]
|
||||
selector_header_list = []
|
||||
option_list = [
|
||||
]
|
||||
return ExcelUtil.get_excel_template(
|
||||
header_list=header_list,
|
||||
selector_header_list=selector_header_list,
|
||||
option_list=option_list,
|
||||
)
|
||||
Reference in New Issue
Block a user