init: 初始化 dpb 桃育种系统代码库

前后端 + 后端 FastAPI 全量源码、部署脚本与文档。
This commit is contained in:
34047007@qq.com
2026-08-06 00:17:49 +08:00
commit b95053c52c
1469 changed files with 322298 additions and 0 deletions
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import urllib.parse
from typing import Annotated
from fastapi import APIRouter, Body, Depends, File, Path, Query, UploadFile
from fastapi.responses import JSONResponse, StreamingResponse
from sqlalchemy.ext.asyncio import AsyncSession
from app.common.response import ResponseSchema, StreamResponse, SuccessResponse
from app.core.base_schema import AuthSchema, PageResultSchema, PaginationQueryParam, ImportResultSchema
from app.core.dependencies import AuthPermission, db_getter
from app.core.router_class import OperationLogRoute
from app.utils.common_util import bytes2file_response
from .schema import (
SeedTreatmentCreateSchema,
SeedTreatmentOutSchema,
SeedTreatmentQueryParam,
SeedTreatmentUpdateSchema,
)
from .service import SeedTreatmentService
SeedTreatmentRouter = APIRouter(route_class=OperationLogRoute, prefix="/seed_treatment", tags=["种子处理"])
@SeedTreatmentRouter.get("/detail/{id}", summary="获取种子处理详情", response_model=ResponseSchema[SeedTreatmentOutSchema])
async def get_seed_treatment__detail_controller(
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:detail"]))],
id: Annotated[int, Path(description="种子处理ID")],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> JSONResponse:
service = SeedTreatmentService(auth, db)
result_dict = await service.detail(id=id)
return SuccessResponse(data=result_dict, msg="获取种子处理详情成功")
@SeedTreatmentRouter.get("/list", summary="分页查询种子处理", response_model=ResponseSchema[PageResultSchema[SeedTreatmentOutSchema]])
async def get_seed_treatment__list_controller(
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:query"]))],
page: Annotated[PaginationQueryParam, Depends()],
search: Annotated[SeedTreatmentQueryParam, Query()],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> JSONResponse:
service = SeedTreatmentService(auth, db)
result_dict = await service.page(
page_no=page.page_no,
page_size=page.page_size,
search=search,
order_by=page.order_by,
)
return SuccessResponse(data=result_dict, msg="查询种子处理列表成功")
@SeedTreatmentRouter.get("/options", summary="种子处理下拉选项")
async def get_seed_treatment__options_controller(
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:query"]))],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> JSONResponse:
service = SeedTreatmentService(auth, db)
options = await service.list_options()
return SuccessResponse(data=options, msg="获取种子处理选项成功")
@SeedTreatmentRouter.post("/create", summary="创建种子处理", response_model=ResponseSchema[SeedTreatmentOutSchema])
async def create_seed_treatment__controller(
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:create"]))],
data: Annotated[SeedTreatmentCreateSchema, Body(description="创建参数")],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> JSONResponse:
service = SeedTreatmentService(auth, db)
result_dict = await service.create(data=data)
return SuccessResponse(data=result_dict, msg="创建种子处理成功")
@SeedTreatmentRouter.put("/update/{id}", summary="修改种子处理", response_model=ResponseSchema[SeedTreatmentOutSchema])
async def update_seed_treatment__controller(
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:update"]))],
id: Annotated[int, Path(description="种子处理ID")],
data: Annotated[SeedTreatmentUpdateSchema, Body(description="修改参数")],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> JSONResponse:
service = SeedTreatmentService(auth, db)
result_dict = await service.update(id=id, data=data)
return SuccessResponse(data=result_dict, msg="修改种子处理成功")
@SeedTreatmentRouter.delete("/delete", summary="删除种子处理", response_model=ResponseSchema[None])
async def delete_seed_treatment__controller(
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:delete"]))],
ids: Annotated[list[int], Body(description="ID列表")],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> JSONResponse:
service = SeedTreatmentService(auth, db)
await service.delete(ids=ids)
return SuccessResponse(msg="删除种子处理成功")
@SeedTreatmentRouter.post("/export", summary="导出种子处理")
async def export_seed_treatment__controller(
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:export"]))],
search: Annotated[SeedTreatmentQueryParam, Query()],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> StreamingResponse:
service = SeedTreatmentService(auth, db)
result_dict_list = await service.get_list(search=search)
export_result = SeedTreatmentService.batch_export(obj_list=[item.model_dump() for item in result_dict_list])
return StreamResponse(
data=bytes2file_response(export_result),
media_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
headers={"Content-Disposition": f"attachment; filename={urllib.parse.quote('种子处理管理.xlsx')}"},
)
@SeedTreatmentRouter.post("/import", summary="导入种子处理", response_model=ResponseSchema[ImportResultSchema])
async def import_seed_treatment__controller(
file: Annotated[UploadFile, File(description="导入文件")],
auth: Annotated[AuthSchema, Depends(AuthPermission(["module_bre:seed_treatment:import"]))],
db: Annotated[AsyncSession, Depends(db_getter)],
) -> JSONResponse:
service = SeedTreatmentService(auth, db)
batch_import_result = await service.batch_import(file=file, update_support=True)
return SuccessResponse(data=batch_import_result, msg="导入种子处理成功")
@SeedTreatmentRouter.post("/download/template", summary="获取种子处理导入模板", dependencies=[Depends(AuthPermission(["module_bre:seed_treatment:download"]))])
async def download_seed_treatment__template_controller() -> StreamingResponse:
import_template_result = SeedTreatmentService.import_template_download()
return StreamResponse(
data=bytes2file_response(import_template_result),
media_type="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet",
headers={
"Content-Disposition": f"attachment; filename={urllib.parse.quote('种子处理管理导入模板.xlsx')}",
"Access-Control-Expose-Headers": "Content-Disposition",
},
)
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from typing import Any
from sqlalchemy.ext.asyncio import AsyncSession
from app.core.base_crud import CRUDBase
from app.core.base_schema import AuthSchema
from .model import SeedTreatmentModel
class BreedingSeedTreatmentCRUD(CRUDBase[SeedTreatmentModel, Any, Any]):
"""种子处理 CRUD —— 直接复用 CRUDBase(已自动注入数据权限过滤)。"""
def __init__(self, auth: AuthSchema, db: AsyncSession) -> None:
super().__init__(SeedTreatmentModel, auth, db)
seed_treatment_crud = BreedingSeedTreatmentCRUD
@@ -0,0 +1,44 @@
"""种子处理 数据模型"""
from datetime import datetime
from sqlalchemy import Float, ForeignKey, Index, Integer, String, Text
from sqlalchemy.orm import Mapped, mapped_column
from app.core.base_model import MappedBase, ModelMixin, UserMixin
class SeedTreatmentModel(ModelMixin, UserMixin, MappedBase):
"""种子处理 主数据表。"""
__tablename__ = "bre_seed_treatment"
combination_id: Mapped[int] = mapped_column(
Integer, ForeignKey("bre_cross_combination.id", ondelete="CASCADE"),
index=True, nullable=False, comment="杂交组合"
)
seed_lot_id: Mapped[int | None] = mapped_column(
Integer, ForeignKey("bre_seed_lot.id", ondelete="SET NULL"),
index=True, nullable=True, comment="种子批(关联补链)", default=None
)
treatment_method: Mapped[str | None] = mapped_column(String(50), nullable=True, comment="处理方式", default=None)
treatment_start: Mapped[str | None] = mapped_column(String(20), nullable=True, comment="处理开始日期", default=None)
treatment_end: Mapped[str | None] = mapped_column(String(20), nullable=True, comment="处理结束日期", default=None)
germination_rate: Mapped[float | None] = mapped_column(Float, nullable=True, comment="发芽率(%)", default=None)
bre_personnel_id: Mapped[int] = mapped_column(
Integer, ForeignKey("bre_personnel.id", ondelete="CASCADE"),
index=True, nullable=True, comment="种子处理人"
)
remark: Mapped[str | None] = mapped_column(Text, nullable=True, comment="备注", default=None)
# 无 status 列:覆盖基类默认 ix_<表>_status_deleted 索引,
# 仅保留 (created_time, is_deleted) 复合索引用于数据权限过滤。
__table_args__ = (
Index("ix_bre_seed_treatment_created_deleted", "created_time", "is_deleted"),
)
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from app.core.base_schema import CommonSchema
"""种子处理 —— Pydantic 校验/序列化模型。"""
from datetime import datetime
from pydantic import BaseModel, ConfigDict, Field
class SeedTreatmentBaseSchema(BaseModel):
model_config = ConfigDict(from_attributes=True)
combination_id: int = Field(..., description="杂交组合")
seed_lot_id: int | None = Field(default=None, description="种子批(关联补链)")
treatment_method: str | None = Field(default=None, description="处理方式")
treatment_start: str | None = Field(default=None, description="处理开始日期")
treatment_end: str | None = Field(default=None, description="处理结束日期")
germination_rate: float | None = Field(default=None, description="发芽率(%)")
bre_personnel_id: int | None = Field(default=None, description="种子处理人")
remark: str | None = Field(default=None, description="备注")
class SeedTreatmentCreateSchema(SeedTreatmentBaseSchema):
pass
class SeedTreatmentUpdateSchema(SeedTreatmentBaseSchema):
combination_id: int | None = Field(default=None, description="杂交组合")
seed_lot_id: int | None = Field(default=None, description="种子批(关联补链)")
treatment_method: str | None = Field(default=None, description="处理方式")
treatment_start: str | None = Field(default=None, description="处理开始日期")
treatment_end: str | None = Field(default=None, description="处理结束日期")
germination_rate: float | None = Field(default=None, description="发芽率(%)")
bre_personnel_id: int | None = Field(default=None, description="种子处理人")
remark: str | None = Field(default=None, description="备注")
class SeedTreatmentOutSchema(SeedTreatmentBaseSchema):
id: int
uuid: str
combination_name: str | None = None # 由 Service 层联表填充
seed_lot_code: str | None = None # 由 Service 层联表填充(种子批号)
treatment_method: str | None = None
treatment_start: str | None = None
treatment_end: str | None = None
germination_rate: float | None = None
bre_personnel_name: str | None = None # 由 Service 层联表填充
remark: str | None = None
created_time: datetime | None = None
updated_time: datetime | None = None
created_by: CommonSchema | None = None
updated_by: CommonSchema | None = None
class SeedTreatmentQueryParam(BaseModel):
combination_id: int | None = Field(default=None, description="杂交组合", json_schema_extra={"q": "eq"})
treatment_method: str | None = Field(default=None, description="处理方式", json_schema_extra={"q": "eq"})
bre_personnel_id: int | None = Field(default=None, description="种子处理人", json_schema_extra={"q": "eq"})
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from typing import Any
from fastapi import UploadFile
from sqlalchemy.ext.asyncio import AsyncSession
from app.core.base_schema import AuthSchema, PageResultSchema, ImportResultSchema
from app.core.exceptions import CustomException
from app.core.logger import logger
from app.utils.common_util import search_to_dict
from app.utils.excel_util import ExcelUtil
from app.utils.dict_util import DictLabelResolver, dict_value_to_label
from .crud import BreedingSeedTreatmentCRUD
from .schema import (
SeedTreatmentCreateSchema,
SeedTreatmentOutSchema,
SeedTreatmentQueryParam,
SeedTreatmentUpdateSchema,
)
from app.api.v1.module_bre.cross_combination.crud import BreedingCrossCombinationCRUD
from app.api.v1.module_bre.personnel.crud import BreedingPersonnelCRUD
from app.core.base_crud import assert_dict_values, assert_no_children, assert_parents_exist
from app.api.v1.module_bre.cross_combination.model import CrossCombinationModel
from app.api.v1.module_bre.personnel.model import PersonnelModel
from app.api.v1.module_bre.seed_lot.model import SeedLotModel
from app.api.v1.module_bre.seed_lot.crud import BreedingSeedLotCRUD
def _is_blank(v: Any) -> bool:
return v is None or (isinstance(v, str) and v.strip() == "")
def _none_if_blank(v: Any) -> Any:
if _is_blank(v):
return None
return str(v).strip() if isinstance(v, str) else v
def _to_float(v: Any) -> float | None:
if _is_blank(v):
return None
try:
return float(v)
except (TypeError, ValueError):
return None
def _to_int(v: Any) -> int | None:
if _is_blank(v):
return None
try:
return int(float(v))
except (TypeError, ValueError):
return None
class SeedTreatmentService:
"""种子处理 模块服务层"""
def __init__(self, auth: AuthSchema, db: AsyncSession) -> None:
self.auth = auth
self.db = db
async def _attach_fk_labels(self, items: list[SeedTreatmentOutSchema]) -> None:
if not items:
return
crud = BreedingSeedTreatmentCRUD(self.auth, self.db)
combination_id_ids = {getattr(it, "combination_id") for it in items if getattr(it, "combination_id")}
if combination_id_ids:
refs = await BreedingCrossCombinationCRUD(self.auth, self.db).get_list(search={"id": ("in", list(combination_id_ids))})
ref_map = {r.id: getattr(r, "combination_code") for r in refs}
for it in items:
it.combination_name = ref_map.get(getattr(it, "combination_id"))
seed_lot_ids = {getattr(it, "seed_lot_id") for it in items if getattr(it, "seed_lot_id")}
if seed_lot_ids:
refs = await BreedingSeedLotCRUD(self.auth, self.db).get_list(search={"id": ("in", list(seed_lot_ids))})
ref_map = {r.id: getattr(r, "lot_code") for r in refs}
for it in items:
it.seed_lot_code = ref_map.get(getattr(it, "seed_lot_id"))
bre_personnel_id_ids = {getattr(it, "bre_personnel_id") for it in items if getattr(it, "bre_personnel_id")}
if bre_personnel_id_ids:
refs = await BreedingPersonnelCRUD(self.auth, self.db).get_list(search={"id": ("in", list(bre_personnel_id_ids))})
ref_map = {r.id: getattr(r, "name") for r in refs}
for it in items:
it.bre_personnel_name = ref_map.get(getattr(it, "bre_personnel_id"))
async def detail(self, id: int) -> SeedTreatmentOutSchema:
obj = await BreedingSeedTreatmentCRUD(self.auth, self.db).get(id=id)
if not obj:
raise CustomException(msg="该种子处理不存在")
out = SeedTreatmentOutSchema.model_validate(obj)
await self._attach_fk_labels([out])
return out
async def get_list(
self,
search: SeedTreatmentQueryParam | None = None,
order_by: list[dict[str, str]] | None = None,
) -> list[SeedTreatmentOutSchema]:
obj_list = await BreedingSeedTreatmentCRUD(self.auth, self.db).get_list(
search=search_to_dict(search), order_by=order_by
)
outs = [SeedTreatmentOutSchema.model_validate(obj) for obj in obj_list]
await self._attach_fk_labels(outs)
return outs
async def page(
self,
page_no: int,
page_size: int,
search: SeedTreatmentQueryParam | None = None,
order_by: list[dict[str, str]] | None = None,
) -> PageResultSchema[SeedTreatmentOutSchema]:
offset = (page_no - 1) * page_size
result = await BreedingSeedTreatmentCRUD(self.auth, self.db).page(
offset=offset,
limit=page_size,
order_by=order_by or [{"id": "asc"}],
search=search_to_dict(search, {}),
out_schema=SeedTreatmentOutSchema,
)
await self._attach_fk_labels(result.items)
return result
async def create(self, data: SeedTreatmentCreateSchema) -> SeedTreatmentOutSchema:
await assert_parents_exist(
self.db,
[
(CrossCombinationModel, data.combination_id, '杂交组合'),
(SeedLotModel, data.seed_lot_id, '种子批'),
(PersonnelModel, data.bre_personnel_id, '育种人员'),
],
)
await assert_dict_values(
self.db,
[
('seed_treatment', data.treatment_method, '处理方式'),
],
)
obj = await BreedingSeedTreatmentCRUD(self.auth, self.db).create(data=data)
out = SeedTreatmentOutSchema.model_validate(obj)
await self._attach_fk_labels([out])
return out
async def update(self, id: int, data: SeedTreatmentUpdateSchema) -> SeedTreatmentOutSchema:
obj = await BreedingSeedTreatmentCRUD(self.auth, self.db).get(id=id)
if not obj:
raise CustomException(msg="更新失败,该种子处理不存在")
await assert_parents_exist(
self.db,
[
(CrossCombinationModel, data.combination_id, '杂交组合'),
(SeedLotModel, data.seed_lot_id, '种子批'),
(PersonnelModel, data.bre_personnel_id, '育种人员'),
],
)
await assert_dict_values(
self.db,
[
('seed_treatment', data.treatment_method, '处理方式'),
],
)
obj = await BreedingSeedTreatmentCRUD(self.auth, self.db).update(id=id, data=data)
out = SeedTreatmentOutSchema.model_validate(obj)
await self._attach_fk_labels([out])
return out
async def delete(self, ids: list[int]) -> None:
if not ids:
raise CustomException(msg="删除失败,删除对象不能为空")
objs = await BreedingSeedTreatmentCRUD(self.auth, self.db).get_list(search={"id": ("in", ids)})
obj_map = {o.id: o for o in objs}
for id_ in ids:
if id_ not in obj_map:
raise CustomException(msg="删除失败,该种子处理不存在")
await BreedingSeedTreatmentCRUD(self.auth, self.db).delete(ids=ids)
async def list_options(self) -> list[dict[str, Any]]:
"""供前端下拉选择使用:返回 [{value, label}]。"""
obj_list = await BreedingSeedTreatmentCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
return [{"value": o.id, "label": o.treatment_method} for o in obj_list]
@staticmethod
def batch_export(obj_list: list[dict[str, Any]]) -> bytes:
mapping_dict = {
"combination_name": "杂交组合",
"treatment_method": "处理方式",
"treatment_start": "处理开始日期",
"treatment_end": "处理结束日期",
"germination_rate": "发芽率(%)",
"bre_personnel_name": "种子处理人",
"remark": "备注",
"created_time": "创建时间",
"created_by": "创建者",
}
data = [dict(item) for item in obj_list]
for item in data:
creator = item.get("created_by")
item["created_by"] = creator.get("name", "未知") if isinstance(creator, dict) else "未知"
item["treatment_method"] = dict_value_to_label("seed_treatment", item.get("treatment_method"))
return ExcelUtil.export_list2excel(list_data=data, mapping_dict=mapping_dict)
async def batch_import(self, file: UploadFile, update_support: bool = False) -> ImportResultSchema:
header_dict = {
"杂交组合": "combination_id",
"处理方式": "treatment_method",
"处理开始日期": "treatment_start",
"处理结束日期": "treatment_end",
"发芽率(%)": "germination_rate",
"种子处理人": "bre_personnel_id",
"备注": "remark",
}
try:
contents = await file.read()
rows = ExcelUtil.read_excel_to_dicts(contents)
await file.close()
if not rows:
raise CustomException(msg="导入文件为空")
missing_headers = [h for h in header_dict if h not in rows[0]]
if missing_headers:
raise CustomException(msg=f"导入文件缺少必要的列: {', '.join(missing_headers)}")
combination_id_refs = await BreedingCrossCombinationCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
combination_id_map = {getattr(r, "combination_code"): r.id for r in combination_id_refs}
bre_personnel_id_refs = await BreedingPersonnelCRUD(self.auth, self.db).get_list(order_by=[{"id": "asc"}])
bre_personnel_id_map = {getattr(r, "name"): r.id for r in bre_personnel_id_refs}
mapped_rows = []
for row in rows:
mapped_rows.append({en: row.get(ch) for ch, en in header_dict.items()})
required_fields = ["combination_id"]
errors = []
for field in required_fields:
missing_indices = [i + 1 for i, r in enumerate(mapped_rows) if _is_blank(r.get(field))]
if missing_indices:
field_name = next(k for k, v in header_dict.items() if v == field)
rows_str = "".join(str(i) for i in missing_indices)
errors.append(f"{field_name}不能为空,第{rows_str}")
if errors:
raise CustomException(msg=f"导入失败,以下行缺少必要字段:\n{'; '.join(errors)}")
error_msgs: list[str] = []
success_count = 0
crud = BreedingSeedTreatmentCRUD(self.auth, self.db)
resolver = DictLabelResolver(self.auth, self.db, ["seed_treatment"])
for i, row in enumerate(mapped_rows, start=1):
try:
combination_id_val = combination_id_map.get(str(row.get("combination_id")).strip()) if not _is_blank(row.get("combination_id")) else None
bre_personnel_id_val = bre_personnel_id_map.get(str(row.get("bre_personnel_id")).strip()) if not _is_blank(row.get("bre_personnel_id")) else None
fields = {
"combination_id": combination_id_val,
"treatment_method": await resolver.resolve("seed_treatment", row.get("treatment_method")),
"treatment_start": _none_if_blank(row.get("treatment_start")),
"treatment_end": _none_if_blank(row.get("treatment_end")),
"germination_rate": _to_float(row.get("germination_rate")),
"bre_personnel_id": bre_personnel_id_val,
"remark": _none_if_blank(row.get("remark")),
}
create_data = SeedTreatmentCreateSchema(**fields)
await crud.create(data=create_data)
success_count += 1
except Exception as e:
error_msgs.append(f"{i}行: {e!s}")
continue
return ImportResultSchema(
valid_count=success_count,
invalid_count=len(error_msgs),
message_list=error_msgs,
)
except Exception as e:
logger.error(f"批量导入种子处理失败: {e!s}")
raise CustomException(msg=f"导入失败: {e!s}")
@staticmethod
def import_template_download() -> bytes:
header_list = [
"杂交组合",
"处理方式",
"处理开始日期",
"处理结束日期",
"发芽率(%)",
"种子处理人",
"备注",
]
selector_header_list = ["处理方式"]
option_list = [
{"处理方式": ["试管胚培", "低温沙藏", "室外沙藏", "层积"]},
]
return ExcelUtil.get_excel_template(
header_list=header_list,
selector_header_list=selector_header_list,
option_list=option_list,
)