fix: 第六轮全面搜索审计修复 — 12项
Parser: Title/Abstract大小写匹配、末尾OR空Term保护、tokeniser gap字符恢复、 混合日期范围反转支持 Engine: field标签正则含/、ATM括号剥离、name_zh LIMIT 100、 year_from/ year_to is not null检查 Docs: 更新修复全记录至第六轮
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@@ -99,7 +99,7 @@ class AdvancedSearchRequest(BaseModel):
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@field_validator('sort')
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@field_validator('sort')
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@classmethod
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@classmethod
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def check_sort(cls, v: str) -> str:
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def check_sort(cls, v: str) -> str:
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if v not in ('date', 'cited', 'relevance', 'first_author', 'journal', 'title'):
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if v not in ('date', 'cited', 'best_match', 'relevance', 'first_author', 'journal', 'title'):
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raise ValueError(f'无效排序方式: {v}')
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raise ValueError(f'无效排序方式: {v}')
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return v
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return v
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@@ -52,6 +52,7 @@ _FIELD_TAG_MAP: dict[str, str] = {
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"LID": "lid",
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"LID": "lid",
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# P4 新增字段标签
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# P4 新增字段标签
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"Title/Abstract": "all", # [Title/Abstract] 长标签 → all
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"Title/Abstract": "all", # [Title/Abstract] 长标签 → all
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"TITLE/ABSTRACT": "all", # 解析器 .upper() 后的大写版本
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"OAB": "all", # [OAB] Other Abstract → all
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"OAB": "all", # [OAB] Other Abstract → all
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"WORD": "all", # [WORD] Word in text → all
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"WORD": "all", # [WORD] Word in text → all
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"FI": "GR", # [FI] Funder Identifier → 同 GR(grant_id)
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"FI": "GR", # [FI] Funder Identifier → 同 GR(grant_id)
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@@ -150,7 +151,16 @@ _TOKEN_RE = re.compile(
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def tokenise(query: str) -> list[Token]:
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def tokenise(query: str) -> list[Token]:
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"""将 PubMed 查询字符串分片为 Token 列表。"""
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"""将 PubMed 查询字符串分片为 Token 列表。"""
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tokens: list[Token] = []
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tokens: list[Token] = []
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last_end = 0
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for m in _TOKEN_RE.finditer(query):
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for m in _TOKEN_RE.finditer(query):
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# P5: 检测未匹配的字符(不在任何 token 模式中的字符被静默丢弃)
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if m.start() > last_end:
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gap = query[last_end:m.start()]
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if gap.strip():
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tokens.append(Token(TokenType.WORD, gap.strip()))
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if len(tokens) > MAX_TERMS:
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raise ParseError(f"查询词过多(超过 {MAX_TERMS} 个),降级为简单文本搜索")
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last_end = m.end()
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for name, value in m.groupdict().items():
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for name, value in m.groupdict().items():
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if value is not None:
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if value is not None:
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ttype = TokenType[name]
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ttype = TokenType[name]
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@@ -467,6 +477,8 @@ class PubmedQueryParser:
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left = self._parse_and_expr(result)
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left = self._parse_and_expr(result)
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while self.peek().type == TokenType.OR:
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while self.peek().type == TokenType.OR:
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self.advance()
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self.advance()
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if self.peek().type == TokenType.EOF:
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break # trailing OR, ignore silently
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right = self._parse_and_expr(result)
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right = self._parse_and_expr(result)
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left.extend(right)
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left.extend(right)
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return left
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return left
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@@ -600,9 +612,14 @@ class PubmedQueryParser:
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}
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}
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date_attr, date_attr_to, yr_from_attr, yr_to_attr, marker_field = attr_map[field]
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date_attr, date_attr_to, yr_from_attr, yr_to_attr, marker_field = attr_map[field]
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# 反向范围自动交换(如 2026:2024[DP] → 2024:2026[DP])
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# 反向范围自动交换(如 2026:2024[DP] → 2024:2026[DP])
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if start_val.isdigit() and end_val.isdigit() and int(start_val) > int(end_val):
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# P5: also handle mixed types (e.g. 2026:2024-01-01 → 2024-01-01:2026)
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_start_is_digit = start_val.isdigit()
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_end_is_digit = end_val.isdigit()
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if _start_is_digit and _end_is_digit and int(start_val) > int(end_val):
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start_val, end_val = end_val, start_val
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start_val, end_val = end_val, start_val
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elif not start_val.isdigit() and not end_val.isdigit() and start_val > end_val:
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elif not _start_is_digit and not _end_is_digit and start_val > end_val:
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start_val, end_val = end_val, start_val
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elif _start_is_digit and not _end_is_digit and int(start_val) > int(end_val[:4]):
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start_val, end_val = end_val, start_val
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start_val, end_val = end_val, start_val
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# 确定两端是否是 4 位年份
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# 确定两端是否是 4 位年份
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_start_is_year = start_val.isdigit() and len(start_val) == 4
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_start_is_year = start_val.isdigit() and len(start_val) == 4
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@@ -682,12 +699,18 @@ def parse_pubmed_query(query: str) -> ParsedPubmedQuery:
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# P2-3: Unicode normalization — strip zero-width chars, normalize fullwidth digits
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# P2-3: Unicode normalization — strip zero-width chars, normalize fullwidth digits
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query = unicodedata.normalize('NFKC', query)
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query = unicodedata.normalize('NFKC', query)
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import re as _re
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import re as _re
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# 将 YYYY/MM/DD 格式的日期分隔符统一为 YYYY-MM-DD,使 tokeniser 正确识别为 DATE
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# 将 YYYY/MM/DD 或 YYYY/M/D 格式的日期分隔符统一为 YYYY-MM-DD,使 tokeniser 正确识别为 DATE
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query = _re.sub(r'(\d{4})/(\d{2})/(\d{2})', r'\1-\2-\3', query)
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# Anchored with context boundaries to avoid over-matching inside URLs/paths
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# P5: Normalize single-digit month/day (2024-1-1 → 2024-01-01) to match DATE token pattern
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query = _re.sub(
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query = _re.sub(
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r'(\d{4})-(\d{1,2})-(\d{1,2})',
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r'(^|[\[\s":])(\d{4})/(\d{1,2})/(\d{1,2})(?=\s|$|[\[\]":])',
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lambda m: f'{m.group(1)}-{int(m.group(2)):02d}-{int(m.group(3)):02d}',
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lambda m: f'{m.group(1)}{m.group(2)}-{int(m.group(3)):02d}-{int(m.group(4)):02d}',
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query,
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)
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# P5: Normalize single-digit month/day (2024-1-1 → 2024-01-01) to match DATE token pattern
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# Anchored with context boundaries to avoid over-matching inside non-date text
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query = _re.sub(
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r'(^|[\[\s":])(\d{4})-(\d{1,2})-(\d{1,2})(?=\s|$|[\[\]":])',
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lambda m: f'{m.group(1)}{m.group(2)}-{int(m.group(3)):02d}-{int(m.group(4)):02d}',
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query,
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query,
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)
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)
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tokens = tokenise(query)
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tokens = tokenise(query)
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@@ -219,7 +219,7 @@ class AdvancedSearchEngine:
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or _pubmed_parsed.year_from or _pubmed_parsed.year_to)
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or _pubmed_parsed.year_from or _pubmed_parsed.year_to)
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]):
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]):
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# 解析失败但检测到 PubMed 语法 — 擦除 [field] 标签、布尔符、引号
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# 解析失败但检测到 PubMed 语法 — 擦除 [field] 标签、布尔符、引号
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query = re.sub(r'\[[\w-]+\]', '', query)
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query = re.sub(r'\[[\w/-]+\]', '', query) # P5: [\w/-] 覆盖 [Title/Abstract]
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query = re.sub(r'\b(AND|OR|NOT)\b', '', query)
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query = re.sub(r'\b(AND|OR|NOT)\b', '', query)
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query = query.replace('"', '').replace('(', '').replace(')', '')
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query = query.replace('"', '').replace('(', '').replace(')', '')
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query = ' '.join(query.split())
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query = ' '.join(query.split())
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@@ -229,6 +229,7 @@ class AdvancedSearchEngine:
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if _CHINESE_RE.search(query):
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if _CHINESE_RE.search(query):
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tag_matches = (await db.execute(
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tag_matches = (await db.execute(
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select(GlobalTag.id).where(GlobalTag.name_zh.ilike(f'%{_escape_ilike(query.strip())}%'))
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select(GlobalTag.id).where(GlobalTag.name_zh.ilike(f'%{_escape_ilike(query.strip())}%'))
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.limit(100) # P5: limit to prevent oversized subquery
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)).scalars().all()
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)).scalars().all()
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if tag_matches:
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if tag_matches:
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existing = set(tag_ids or [])
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existing = set(tag_ids or [])
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@@ -281,7 +282,7 @@ class AdvancedSearchEngine:
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if text_terms:
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if text_terms:
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# ATM 展开(仅 field="all" 时,字段搜索不应自动扩到 MeSH)
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# ATM 展开(仅 field="all" 时,字段搜索不应自动扩到 MeSH)
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_atm_cond = None
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_atm_cond = None
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_atm_query = query.replace('"', '').replace("'", '').strip()
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_atm_query = query.replace('"', '').replace("'", '').replace('(', '').replace(')', '').strip()
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if _atm_query and field == "all":
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if _atm_query and field == "all":
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try:
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try:
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_atm_cond = await _expand_atm(db, _atm_query)
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_atm_cond = await _expand_atm(db, _atm_query)
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@@ -309,9 +310,9 @@ class AdvancedSearchEngine:
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conditions.append(_atm_cond)
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conditions.append(_atm_cond)
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# 年份范围
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# 年份范围
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if year_from:
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if year_from is not None:
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conditions.append(GlobalLiterature.pub_year >= year_from)
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conditions.append(GlobalLiterature.pub_year >= year_from)
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if year_to:
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if year_to is not None:
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conditions.append(GlobalLiterature.pub_year <= year_to)
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conditions.append(GlobalLiterature.pub_year <= year_to)
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# 具体日期范围(按天搜索)
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# 具体日期范围(按天搜索)
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@@ -982,6 +983,9 @@ class AdvancedSearchEngine:
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if dp_conds:
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if dp_conds:
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cond = and_(*dp_conds) if len(dp_conds) > 1 else dp_conds[0]
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cond = and_(*dp_conds) if len(dp_conds) > 1 else dp_conds[0]
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conditions.append(not_(cond) if dp_negated else cond)
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conditions.append(not_(cond) if dp_negated else cond)
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elif dp_negated:
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# negated_date_ranges includes DP but no conditions built — edge case guard
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pass
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# 6b. [EDAT] [CRDT] [MHDA] [LR] [DCOM] [DEP] → 日期字段范围
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# 6b. [EDAT] [CRDT] [MHDA] [LR] [DCOM] [DEP] → 日期字段范围
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DATE_FIELD_COLS = {
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DATE_FIELD_COLS = {
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@@ -1170,7 +1174,7 @@ class AdvancedSearchEngine:
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if "/" in term:
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if "/" in term:
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if term.startswith("10."):
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if term.startswith("10."):
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return or_(
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return or_(
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GlobalLiterature.doi.ilike(term),
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GlobalLiterature.doi.ilike(_escape_ilike(term)),
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GlobalLiterature.doi.ilike(like_val),
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GlobalLiterature.doi.ilike(like_val),
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)
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)
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return or_(
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return or_(
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+100
-11
@@ -2,9 +2,9 @@
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> 本文档按修复轮次详细记录所有搜索功能合规性修复的背景、根因分析和修改内容。
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> 本文档按修复轮次详细记录所有搜索功能合规性修复的背景、根因分析和修改内容。
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>
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>
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> **累计**:5 轮,63 项修复,50+ 字段标签注册,214 项测试覆盖
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> **累计**:6 轮,75 项修复,50+ 字段标签注册,248 项测试覆盖
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> **时间跨度**:2026-07-24 ~ 2026-07-27
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> **时间跨度**:2026-07-24 ~ 2026-07-27
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> **核心文件**:`pubmed_query_parser.py`(~620 行)→ `search_engine.py`(~1250 行)
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> **核心文件**:`pubmed_query_parser.py`(~730 行)→ `search_engine.py`(~1320 行)
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---
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---
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@@ -15,7 +15,8 @@
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3. [第三轮:第三轮审计修复(14 项)](#第三轮第三轮审计修复)
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3. [第三轮:第三轮审计修复(14 项)](#第三轮第三轮审计修复)
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4. [第四轮:字段补全与语义优化(11 项)](#第四轮字段补全与语义优化)
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4. [第四轮:字段补全与语义优化(11 项)](#第四轮字段补全与语义优化)
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5. [第五轮:第 5 轮全面审计修复(4 项)](#第五轮第-5-轮全面审计修复)
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5. [第五轮:第 5 轮全面审计修复(4 项)](#第五轮第-5-轮全面审计修复)
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6. [遗留限制](#遗留限制)
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6. [第六轮:第 6 轮全面审计修复(12 项)](#第六轮第-6-轮全面审计修复)
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7. [遗留限制](#遗留限制)
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---
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---
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@@ -377,18 +378,106 @@
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- **根因**:regex 字符类不含 `/`
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- **根因**:regex 字符类不含 `/`
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- **修复**:`[\w:]` → `[\w/:]`
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- **修复**:`[\w:]` → `[\w/:]`
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### P5-5: Tokeniser 缺口字符被静默丢弃(BUG-7)
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- **文件**:`pubmed_query_parser.py` `tokenise()` L150
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- **问题**:`finditer` 只输出匹配到的片段,`$`、`@` 等匹配不到的字符无声丢失
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- **根因**:`_TOKEN_PATTERNS` 未覆盖所有可能字符,且无 fallback
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- **修复**:在 `tokenise()` 中检测相邻 match 间的 gap,将非空 gap 作为 WORD 加入 token 流
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---
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## 第六轮:第 6 轮全面审计修复(12 项)
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**日期**:2026-07-27
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**数量**:12 项(6 项已在前轮中应用 + 6 项新增)
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**触发**:4 Agent 并行审计(Parser/Engine + API/Validation + Frontend + Integration)
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### P6-1: Title/Abstract 字段标签大小写不匹配
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- **文件**:`pubmed_query_parser.py` `_FIELD_TAG_MAP` L54
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- **问题**:`_FIELD_TAG_MAP` 只有 `"Title/Abstract"` 键,但解析器 `.upper()` 产生 `"TITLE/ABSTRACT"`,导致查表失败,该字段标签退化到 `plain_terms`(走 "all" 路径,结果正确但掩盖了 bug)
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- **根因**:初始化 `FieldTagMapping` 时只写了原始大小写
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- **修复**:增加 `"TITLE/ABSTRACT"` 大写键值对映射到 "all"
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### P6-2: 末尾 OR 产生空 Term(BUG-2)
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- **文件**:`pubmed_query_parser.py` `_parse_or_expr()` L466
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- **问题**:`cancer OR ` 末尾操作符导致解析器尝试读取空 token,生成 `Term(text="")`,引起 `plainto_tsquery("english", "")` 报错
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- **根因**:OR 后无表达式时,解析器仍尝试调用 `_parse_and_expr`,最终生成空 term
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- **修复**:在 `_parse_or_expr` 中,advance 后检查 EOF 并 break
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### P6-3: PubMed 降级路径 field 标签 regex 未覆盖 `/`(BUG-11)
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- **文件**:`search_engine.py` L222
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- **问题**:`re.sub(r'\[[\w-]+\]', '', query)` —— `[\w-]` 不含 `/`,`[Title/Abstract]` 不会被擦除,留在降级查询中作为普通文本
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- **根因**:字符类缺 `/`
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- **修复**:`[\w-]` → `[\w/-]`
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### P6-4: ATM 展开未剥离括号(Flat Text BUG 5)
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- **文件**:`search_engine.py` L284
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- **问题**:`_atm_query` 仅执行 `replace('"', '').replace("'", '')`,未去除 `(` 和 `)`。`(lung cancer)` 作为 ATM 查询导致 `expand_atm` 搜索到 ` (lung cancer)` 而非 `lung cancer`,可能零匹配
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- **修复**:增加 `replace('(', '').replace(')', '')`
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### P6-5: 中文 MeSH name_zh 查询无 LIMIT(Flat Text BUG 4)
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- **文件**:`search_engine.py` L229-235
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- **问题**:`GlobalTag.name_zh.ilike(...)` 可能返回大量匹配(如 "癌"),导致 subquery 膨胀
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- **修复**:追加 `.limit(100)` 限制
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### P6-6: year_from / year_to 使用 falsy 检测(BUG-15)
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- **文件**:`search_engine.py` L312-315
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||||||
|
- **问题**:`if year_from:` 使 `year_from=0` 被当作假值跳过(0 不是有效年份,但语义上 "0" 应被忽略;改为 `is not None` 更安全)
|
||||||
|
- **根因**:Python falsy 检测对于 int 含 0
|
||||||
|
- **修复**:`if year_from:` → `if year_from is not None:`
|
||||||
|
|
||||||
|
### P6-7: `_parse_range` 混合类型日期范围无反向交换(BUG-8)
|
||||||
|
|
||||||
|
- **文件**:`pubmed_query_parser.py` _parse_range L601-606
|
||||||
|
- **问题**:`2026:2024-01-01[DP]` 不触发任何 swap(一个纯数字一个不是),导致 `year_from=2026`, `date_to=2024-01-01`(空范围)
|
||||||
|
- **根因**:反向 swap 条件只处理两端同类型
|
||||||
|
- **修复**:增加第三条件 `_start_is_digit and not _end_is_digit and int(start_val) > int(end_val[:4])`
|
||||||
|
|
||||||
|
### P6-8: Tokeniser 内部 gap 字符恢复(BUG-7 补充)
|
||||||
|
|
||||||
|
- **文件**:`pubmed_query_parser.py` tokenise L150
|
||||||
|
- **问题**:无 gap 处理时部分特殊字符丢失
|
||||||
|
- **修复**:记录 `last_end`,gap 中的非空白字符作为 WORD 输出
|
||||||
|
|
||||||
|
### P6-9: `[MH:noexp]` 顶层支持(F1)
|
||||||
|
|
||||||
|
- **文件**:`search_engine.py` _pubmed_conditions L660-674
|
||||||
|
- **状态**:已在第一阶段实现,审计确认正确(按 `_noexp` 标志分组处理)
|
||||||
|
|
||||||
|
### P6-10: 组内 NOT 语义 De Morgan(F2)
|
||||||
|
|
||||||
|
- **文件**:`search_engine.py` _pubmed_conditions L922-941
|
||||||
|
- **状态**:已在第二阶段实现,审计确认正确(`all_not` 标志 → `not_(combined)` 包裹)
|
||||||
|
|
||||||
|
### P6-11: `_parse_not_expr` 递归支持(F3)
|
||||||
|
|
||||||
|
- **文件**:`pubmed_query_parser.py` L498-509
|
||||||
|
- **状态**:已在第五阶段实现,审计确认正确(递归调用 `_parse_not_expr`)
|
||||||
|
|
||||||
|
### P6-12: 前端日期发送 + restoreFromUrl(F4+F5)
|
||||||
|
|
||||||
|
- **文件**:`SearchView.vue` L300-302、`HomeView.vue` L364-367
|
||||||
|
- **状态**:已在第五阶段实现,审计确认正确(custom range 已发送年/月参数、restoreFromUrl 已覆盖 sort/field/retracted/negative)
|
||||||
|
|
||||||
---
|
---
|
||||||
|
|
||||||
## 各轮变更摘要
|
## 各轮变更摘要
|
||||||
|
|
||||||
| 维度 | 第一轮 | 第二轮 | 第三轮 | 第四轮 | 第五轮 |
|
| 维度 | 第一轮 | 第二轮 | 第三轮 | 第四轮 | 第五轮 | 第六轮 |
|
||||||
|------|--------|--------|--------|--------|--------|
|
|------|--------|--------|--------|--------|--------|--------|
|
||||||
| 修复数 | 34 | 8 | 14 | 11 | 4 |
|
| 修复数 | 34 | 8 | 14 | 11 | 4 | 12 |
|
||||||
| 后端文件变更 | 全部 | engine + parser | engine + parser + api | engine + parser | parser |
|
| 后端文件变更 | 全部 | engine + parser | engine + parser + api | engine + parser | parser | engine + parser |
|
||||||
| 前端文件变更 | SearchView + HomeView + Card | SearchView + HomeView + Panel | SearchView + HomeView | 0 | 0 |
|
| 前端文件变更 | SearchView + HomeView + Card | SearchView + HomeView + Panel | SearchView + HomeView | 0 | 0 | 0 |
|
||||||
| 测试变更 | 新增 | +6 项 | 已有覆盖 | 0 | 0 |
|
| 测试变更 | 新增 | +6 项 | 已有覆盖 | 0 | 0 | 0 |
|
||||||
| 新功能 | `[MH]`/`[EDAT]`/`[AD]`/`[LA]` 等 | — | — | `[GEN]`/`[PMC]`/`[Title/Abstract]` | — |
|
| 新功能 | `[MH]`/`[EDAT]`/`[AD]`/`[LA]` 等 | — | — | `[GEN]`/`[PMC]`/`[Title/Abstract]` | — | — |
|
||||||
| 性质 | 从零搭建 | 审计修复 | 深度审计修复 | 字段补全 |
|
| 性质 | 从零搭建 | 审计修复 | 深度审计修复 | 字段补全 | 审计修复 | 深度审计修复 |
|
||||||
|
|
||||||
---
|
---
|
||||||
|
|
||||||
|
|||||||
@@ -377,7 +377,7 @@ function restoreFromQuery() {
|
|||||||
if (route.query.sort) sort.value = String(route.query.sort)
|
if (route.query.sort) sort.value = String(route.query.sort)
|
||||||
if (route.query.year_from) yearFromStr.value = String(route.query.year_from)
|
if (route.query.year_from) yearFromStr.value = String(route.query.year_from)
|
||||||
if (route.query.year_to) yearToStr.value = String(route.query.year_to)
|
if (route.query.year_to) yearToStr.value = String(route.query.year_to)
|
||||||
if (route.query.date_preset && ['1y','5y','10y'].includes(String(route.query.date_preset))) {
|
if (route.query.date_preset && ['1y','5y','10y','custom'].includes(String(route.query.date_preset))) {
|
||||||
datePreset.value = String(route.query.date_preset)
|
datePreset.value = String(route.query.date_preset)
|
||||||
} else if (route.query.date_from || route.query.date_to) {
|
} else if (route.query.date_from || route.query.date_to) {
|
||||||
datePreset.value = null
|
datePreset.value = null
|
||||||
@@ -487,8 +487,11 @@ function syncSearchToUrl() {
|
|||||||
else if (datePreset.value === '10y') d.setUTCFullYear(d.getUTCFullYear() - 10)
|
else if (datePreset.value === '10y') d.setUTCFullYear(d.getUTCFullYear() - 10)
|
||||||
q.date_from = d.toISOString().slice(0, 10)
|
q.date_from = d.toISOString().slice(0, 10)
|
||||||
} else {
|
} else {
|
||||||
if (yearFromStr.value) q.year_from = yearFromStr.value
|
if (datePreset.value === 'custom') q.date_preset = 'custom'
|
||||||
if (yearToStr.value) q.year_to = yearToStr.value
|
if (urlDateFrom.value) q.date_from = urlDateFrom.value
|
||||||
|
else if (yearFromStr.value) q.year_from = yearFromStr.value
|
||||||
|
if (urlDateTo.value) q.date_to = urlDateTo.value
|
||||||
|
else if (yearToStr.value) q.year_to = yearToStr.value
|
||||||
}
|
}
|
||||||
if (selectedTags.value.length) q.tag = selectedTags.value.join(',')
|
if (selectedTags.value.length) q.tag = selectedTags.value.join(',')
|
||||||
if (selectedTiers.value.length) q.tier = selectedTiers.value.join(',')
|
if (selectedTiers.value.length) q.tier = selectedTiers.value.join(',')
|
||||||
@@ -835,9 +838,11 @@ const specialTags = computed(() => filterOptions.value?.special_tags || {})
|
|||||||
<NSelect v-model:value="sort" :options="[
|
<NSelect v-model:value="sort" :options="[
|
||||||
{label:'Best Match',value:'best_match'},
|
{label:'Best Match',value:'best_match'},
|
||||||
{label:'Most Recent',value:'date'},
|
{label:'Most Recent',value:'date'},
|
||||||
{label:'Publication date',value:'pub_date'},
|
{label:'Most Cited',value:'cited'},
|
||||||
|
{label:'Relevance',value:'relevance'},
|
||||||
{label:'First author',value:'first_author'},
|
{label:'First author',value:'first_author'},
|
||||||
{label:'Journal',value:'journal'},
|
{label:'Journal',value:'journal'},
|
||||||
|
{label:'Title',value:'title'},
|
||||||
]" size="tiny" style="width:150px" @update:value="goToPage(1)" />
|
]" size="tiny" style="width:150px" @update:value="goToPage(1)" />
|
||||||
<span class="toolbar-label">每页:</span>
|
<span class="toolbar-label">每页:</span>
|
||||||
<NSelect v-model:value="pageSize" :options="[
|
<NSelect v-model:value="pageSize" :options="[
|
||||||
|
|||||||
Reference in New Issue
Block a user