feat: initial commit - oncology literature search platform
OncoLit: a multi-tenant oncology literature search, feed, and collaboration platform. Built with FastAPI + Vue 3 + PostgreSQL. Includes PubMed pipeline, drug approvals, AI summaries, and systematic review tools.
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/** 文献作者 */
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export interface Author {
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family?: string
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given?: string
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affiliation?: string
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[key: string]: unknown
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}
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/** 系统标签 */
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export interface LiteratureTag {
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id: number | string
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category?: string
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name_zh?: string
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path?: string
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is_major?: boolean
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[key: string]: unknown
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}
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/** 研究设计分类 */
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export interface StudyDesign {
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primary?: string
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sub?: string
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design?: string | null
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label_zh?: string
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}
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/** 临床试验注册 */
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export interface TrialReg {
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nct?: string
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eudract?: string
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chictr?: string
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}
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/** 基金资助 */
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export interface Grant {
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agency?: string
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grant_id?: string
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[key: string]: unknown
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}
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/** PRISMA 流程数据 */
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export interface PrismaFlowData {
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identification_total: number
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duplicates_removed: number
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screened: number
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excluded_screening: number
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full_text_assessed: number
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excluded_eligibility: number
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included_total: number
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excluded_reasons: Record<string, number>
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}
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/** 方法学小结 */
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export interface MethodsSummary {
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summary: string
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language: string
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}
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/** 许可信息 */
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export interface LicenseInfo {
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href?: string
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type?: string
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text?: string
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}
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/** RCT 检测结果 */
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export interface RctDetection {
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is_rct?: boolean
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confidence?: 'confirmed' | 'suspected'
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source?: 'pub_type' | 'keyword'
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evidence?: string
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}
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/** PICO 数据结构 */
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export interface PicoData {
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population?: string | null
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intervention?: string | null
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comparator?: string | null
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outcome?: string | null
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sample_size?: number | null
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effect_size?: {
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hr?: number | null
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or?: number | null
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rr?: number | null
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ci_lower?: number | null
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ci_upper?: number | null
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p_value?: number | null
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[key: string]: unknown
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} | null
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}
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/** 效应量解析结果 */
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export interface ParsedEffect {
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endpoint: string
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effect_type: string | null
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value: number | null
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ci_lower: number | null
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ci_upper: number | null
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p_value: number | null
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raw: string
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}
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/** Outcome 表数据 */
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export interface OutcomeTable {
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caption: string
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headers: string[]
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rows?: string[][]
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table_type: string
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_note: string
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parsed_effects?: ParsedEffect[]
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}
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/** 基线特征数据 */
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export interface BaselineData {
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table1_caption?: string | null
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arms?: string[]
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extracted_fields?: Record<string, Record<string, string>>
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parsed_values?: Record<string, Record<string, unknown>>
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header_sample_sizes?: Record<string, { n: number; raw: string }>
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}
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/** 提取数据响应 */
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export interface ExtractedDataResponse {
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pmid: number
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title?: string
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pico?: PicoData | null
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baseline?: BaselineData | null
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outcome_tables?: OutcomeTable[]
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tables?: {
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caption: string
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headers: string[]
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rows: string[][]
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}[]
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parsed_effects?: ParsedEffect[]
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sections?: { heading?: string; text: string }[]
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_note: string
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}
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/** 预提取数据（Table 1 基线） */
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export interface PreExtractedData {
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table1_caption?: string
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arms?: string[]
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extracted_fields?: Record<string, Record<string, string>>
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ai_extracted?: Record<string, unknown>
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}
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/** PubMed 补充解析——化合物 */
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export interface ChemicalSubstance {
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name?: string
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registry_number?: string
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mesh_ui?: string
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}
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/** PubMed 补充解析——数据库引用 */
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export interface DataBankEntry {
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databank_name?: string
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accession_numbers?: string[]
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}
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/** PubMed 补充解析——补充 MeSH */
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export interface SupplMeshEntry {
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descriptor?: string
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ui?: string
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type?: string
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}
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/** 文献对象（列表用） */
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export interface LiteratureItem {
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pmid: number
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title?: string
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doi?: string
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first_author?: string
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affiliation?: string
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journal?: string
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journal_tier?: string | number
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pub_date?: string
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article_date?: string | null
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pub_year?: number | string
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volume?: string
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issue?: string
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pages?: string
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pub_types?: string[]
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authors?: Author[]
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is_oa?: boolean
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pmc_id?: string
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cited_by_count?: number
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tags?: LiteratureTag[]
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keywords?: string[]
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grants?: Grant[]
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abstract?: string
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ai_summary?: string
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study_design?: StudyDesign | null
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trial_reg?: TrialReg | null
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retracted?: boolean
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is_negative_result?: boolean
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rct_detection?: RctDetection | null
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created_at?: string
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updated_at?: string
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[key: string]: unknown
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}
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/** 文献详情（带所有字段） */
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export interface LiteratureDetail extends LiteratureItem {
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language?: string
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source?: string
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pico?: Record<string, unknown> | null
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mesh_headings?: { descriptor?: string; ui?: string; major?: boolean; qualifiers?: string[] }[]
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full_text_sections?: { tables?: any[]; sections?: any[] } | null
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retraction_details?: { ref_source?: string; ref_pmid?: number } | null
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license_info?: LicenseInfo | null
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pre_extracted_data?: PreExtractedData | null
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chemical_list?: ChemicalSubstance[]
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gene_symbols?: string[]
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num_refs?: number | null
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publication_status?: string | null
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article_date?: string | null
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databank_list?: DataBankEntry[]
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suppl_mesh_list?: SupplMeshEntry[]
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reading_status?: string | null
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}
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/** 系统评价项目 */
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export interface SystematicReview {
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id: string
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title: string
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objective?: string
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protocol?: string
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prisma_stage: string
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status: string
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inclusion_criteria: string[]
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exclusion_criteria: string[]
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databases_searched: string[]
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search_strategy: Record<string, unknown>
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notes?: string
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created_at?: string
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updated_at?: string
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}
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/** 评价文献 */
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export interface ReviewLiterature {
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id: string
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review_id: string
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literature_id: string
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pmid: number
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title?: string
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first_author?: string
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journal?: string
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pub_date?: string
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doi?: string
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stage: string
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exclusion_reason?: string
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notes?: string
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quality_score?: string
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study_design?: StudyDesign | null
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retracted?: boolean
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pico?: Record<string, unknown> | null
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created_at?: string
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}
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/** 笔记 */
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export interface NoteItem {
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id: string
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literature_id?: string
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pmid?: number | null
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literature_title?: string
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_show?: boolean
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author_name?: string | null
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content: string
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quote_text?: string | null
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is_private?: boolean
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created_at?: string
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updated_at?: string
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[key: string]: unknown
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}
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/** 个人标签 */
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export interface PersonalTag {
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name: string
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[key: string]: unknown
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}
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/** 通知项 */
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export interface NotificationItem {
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id: string
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is_read: boolean
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title: string
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content?: string
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created_at: string
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[key: string]: unknown
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}
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/** 收藏状态 */
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export interface SavedItem {
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pmid: number
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rating?: number
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personal_tags?: PersonalTag[]
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reading_status?: string
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[key: string]: unknown
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}
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/** Feed 推送项（带优先级） */
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export interface FeedItem extends LiteratureItem {
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id: string
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priority?: string
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}
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/** 标签选项（筛选面板使用） */
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export interface TagOption {
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id: string | number
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name_zh: string
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level: number
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parent_id?: string | null
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is_selectable?: boolean
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tag_category?: string
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[key: string]: unknown
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}
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/** 搜索请求体 */
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export interface SearchRequestBody {
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query: string
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field: string
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page: number
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page_size: number
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sort?: string
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year_from?: number
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year_to?: number
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date_from?: string
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date_to?: string
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journal_tiers?: string[]
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tag_ids?: string[]
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}
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/** 个人文件夹 */
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export interface FolderItem {
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id: string
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name: string
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description?: string | null
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color: string
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sort_order: number
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article_count: number
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created_at?: string
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}
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/** 通用分页响应 */
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export interface PaginatedResponse<T> {
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items: T[]
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total: number
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total_pages?: number
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page?: number
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page_size?: number
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}
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